Stem-loop ocu-mir-542

Accession

MI0039445

Description

Oryctolagus cuniculus ocu-mir-542 precursor miRNA

Sequence

UCGGGGAUCAUCAUGUCACGAGAuaccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((....)))..)))))))))...))))..))))..

Structure

--    GG    UCA         -A   c 
  UCGG  AUCA   UGUCACGAG  uac a
  ||||  ||||   |||||||||  |||  
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 

Annotation confidence Not enough data

Genome context

CM000811.1: 108850875-108850933 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ocu-mir-542

Mature ocu-miR-542-5p

• Accession: MIMAT0048525
• Description: Oryctolagus cuniculus ocu-miR-542-5p mature miRNA
• Sequence: 1 - UCGGGGAUCAUCAUGUCACGAGA - 23
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-542-3p

• Accession: MIMAT0048526
• Description: Oryctolagus cuniculus ocu-miR-542-3p mature miRNA
• Sequence: 38 - UGUGACAGAUUGAUAACUGAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344