miRBase entry: ocu-mir-542

Stem-loop ocu-mir-542


Accession
MI0039445
Description
Oryctolagus cuniculus ocu-mir-542 precursor miRNA


Sequence

UCGGGGAUCAUCAUGUCACGAGAuaccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((....)))..)))))))))...))))..))))..

Structure
--    GG    UCA         -A   c 
  UCGG  AUCA   UGUCACGAG  uac a
  ||||  ||||   |||||||||  |||  
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u 


Annotation confidence Not enough data
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Genome context
CM000811.1: 108850875-108850933 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from ocu-mir-542
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-542-5p

Accession MIMAT0048525
Description Oryctolagus cuniculus ocu-miR-542-5p mature miRNA
Sequence 1 - UCGGGGAUCAUCAUGUCACGAGA - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-542-3p

Accession MIMAT0048526
Description Oryctolagus cuniculus ocu-miR-542-3p mature miRNA
Sequence 38 - UGUGACAGAUUGAUAACUGAAA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344