miRBase entry: ocu-mir-541

Stem-loop ocu-mir-541


Accession
MI0039444
Description
Oryctolagus cuniculus ocu-mir-541 precursor miRNA


Sequence

AAAGGAUUCUGCUGUCGGUCCCACUccaaaguucacagaaugggUGGUGGGCACAGAAUCCAGACU
...((((((((.((((.(..((((((....((((...))))))))))).)))))))))))).....

Structure
--AAA        C    G UC      caaa    a 
     GGAUUCUG UGUC G  CCACUc    guuc  
     |||||||| |||| |  ||||||    |||| c
     CCUAAGAC ACGG U  GGUggg    uaag  
UCAGA        -    G --      ----    a 


Annotation confidence Not enough data
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Genome context
GL019048.1: 152092-152157 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ocu-mir-541
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-541-5p

Accession MIMAT0048523
Description Oryctolagus cuniculus ocu-miR-541-5p mature miRNA
Sequence 1 - AAAGGAUUCUGCUGUCGGUCCCACU - 25
Evidence experimental
Illumina [1]

Mature ocu-miR-541-3p

Accession MIMAT0048524
Description Oryctolagus cuniculus ocu-miR-541-3p mature miRNA
Sequence 45 - UGGUGGGCACAGAAUCCAGACU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344