miRBase entry: ocu-mir-541

Stem-loop ocu-mir-541

Accession

MI0039444

Description

Oryctolagus cuniculus ocu-mir-541 precursor miRNA

Sequence

AAAGGAUUCUGCUGUCGGUCCCACUccaaaguucacagaaugggUGGUGGGCACAGAAUCCAGACU
...((((((((.((((.(..((((((....((((...))))))))))).)))))))))))).....

Structure

--AAA        C    G UC      caaa    a 
     GGAUUCUG UGUC G  CCACUc    guuc  
     |||||||| |||| |  ||||||    |||| c
     CCUAAGAC ACGG U  GGUggg    uaag  
UCAGA        -    G --      ----    a

Annotation confidence Not enough data

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Genome context

GL019048.1: 152092-152157 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from ocu-mir-541

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-541-5p

Accession	MIMAT0048523
Description	Oryctolagus cuniculus ocu-miR-541-5p mature miRNA
Sequence	1 - AAAGGAUUCUGCUGUCGGUCCCACU - 25
Evidence	experimental Illumina [1]

Mature ocu-miR-541-3p

Accession	MIMAT0048524
Description	Oryctolagus cuniculus ocu-miR-541-3p mature miRNA
Sequence	45 - UGGUGGGCACAGAAUCCAGACU - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344