Stem-loop ocu-mir-500

Accession

MI0039428

Description

Oryctolagus cuniculus ocu-mir-500 precursor miRNA

Sequence

UAAUCCUUGCUACCUGGGUGAGAGUgcuaacugaaugcaAUGCACCUGGGCAAGGAUUCAG
.(((((((((...(((((((....(((.........)))...))))))))))))))))...

Structure

--U         UAC       AGAG   uaa 
   AAUCCUUGC   CUGGGUG    Ugc   c
   |||||||||   |||||||    |||   u
   UUAGGAACG   GGUCCAC    acg   g
GAC         ---       -GUA   uaa 

Annotation confidence Not enough data

Genome context

CM000811.1: 34237519-34237579 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from ocu-mir-500

Mature ocu-miR-500-5p

• Accession: MIMAT0048491
• Description: Oryctolagus cuniculus ocu-miR-500-5p mature miRNA
• Sequence: 1 - UAAUCCUUGCUACCUGGGUGAGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-500-3p

• Accession: MIMAT0048492
• Description: Oryctolagus cuniculus ocu-miR-500-3p mature miRNA
• Sequence: 40 - AUGCACCUGGGCAAGGAUUCAG - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344