miRBase entry: ocu-mir-433

Stem-loop ocu-mir-433


Accession
MI0039406
Description
Oryctolagus cuniculus ocu-mir-433 precursor miRNA


Sequence

UACGGUGAGCCUGUCAUUAUUCagagaggcuagauccucgcugcugagaaggAUCAUGAUGGGCUCCUCGGUGU
..(((.(((((((((((.((((((.((((......)))).)))........))).))))))))))).)))....

Structure
--UA   U           U   --------   a    cu 
    CGG GAGCCUGUCAU AUU        Cag gagg  a
    ||| ||||||||||| |||        ||| ||||   
    GCU CUCGGGUAGUA UAg        guc cucc  g
UGUG   C           C   gaagaguc   g    ua 


Annotation confidence Not enough data
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Genome context
GL019048.1: 6784-6857 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from ocu-mir-433
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-433-5p

Accession MIMAT0048449
Description Oryctolagus cuniculus ocu-miR-433-5p mature miRNA
Sequence 1 - UACGGUGAGCCUGUCAUUAUUC - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-433-3p

Accession MIMAT0048450
Description Oryctolagus cuniculus ocu-miR-433-3p mature miRNA
Sequence 53 - AUCAUGAUGGGCUCCUCGGUGU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344