miRBase entry: ocu-mir-421

Stem-loop ocu-mir-421

Accession

MI0039401

Description

Oryctolagus cuniculus ocu-mir-421 precursor miRNA

Sequence

CUCAUUAAAUGUUUGUUGAAUGAaaaaaugaaucAUCAACAGACAUUAAUUGGGCGC
((((...((((((((((((.(((.........)))))))))))))))...))))...

Structure

---    UUA            A   aaa 
   CUCA   AAUGUUUGUUGA UGA   a
   ||||   |||||||||||| |||   a
   GGGU   UUACAGACAACU Acu   u
CGC    UAA            -   aag

Annotation confidence Not enough data

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Genome context

GL018757.1: 1593435-1593491 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-421

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-421-5p

Accession	MIMAT0048439
Description	Oryctolagus cuniculus ocu-miR-421-5p mature miRNA
Sequence	1 - CUCAUUAAAUGUUUGUUGAAUGA - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-421-3p

Accession	MIMAT0048440
Description	Oryctolagus cuniculus ocu-miR-421-3p mature miRNA
Sequence	35 - AUCAACAGACAUUAAUUGGGCGC - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344