miRBase entry: ocu-mir-421

Stem-loop ocu-mir-421


Accession
MI0039401
Description
Oryctolagus cuniculus ocu-mir-421 precursor miRNA


Sequence

CUCAUUAAAUGUUUGUUGAAUGAaaaaaugaaucAUCAACAGACAUUAAUUGGGCGC
((((...((((((((((((.(((.........)))))))))))))))...))))...

Structure
---    UUA            A   aaa 
   CUCA   AAUGUUUGUUGA UGA   a
   ||||   |||||||||||| |||   a
   GGGU   UUACAGACAACU Acu   u
CGC    UAA            -   aag 


Annotation confidence Not enough data
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Genome context
GL018757.1: 1593435-1593491 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-421-5p

Accession MIMAT0048439
Description Oryctolagus cuniculus ocu-miR-421-5p mature miRNA
Sequence 1 - CUCAUUAAAUGUUUGUUGAAUGA - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-421-3p

Accession MIMAT0048440
Description Oryctolagus cuniculus ocu-miR-421-3p mature miRNA
Sequence 35 - AUCAACAGACAUUAAUUGGGCGC - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344