miRBase entry: ocu-mir-221

Stem-loop ocu-mir-221


Accession
MI0039357
Description
Oryctolagus cuniculus ocu-mir-221 precursor miRNA

Literature search
2 open access papers mention ocu-mir-221
(3 sentences)

Sequence

ACCUGGCAUACAAUGUAGAUUUCUGUguuuuuugggcaacAGCUACAUUGUCUGCUGGGUUUC
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))...

Structure
---        U         AUUU    -    u 
   ACCUGGCA ACAAUGUAG    CUGU guuu  
   |||||||| |||||||||    |||| |||| u
   UGGGUCGU UGUUACAUC    GAca cggg  
CUU        C         ----    a    u 


Annotation confidence Not enough data
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Genome context
CM000811.1: 30972910-30972972 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-221-5p

Accession MIMAT0048354
Description Oryctolagus cuniculus ocu-miR-221-5p mature miRNA
Sequence 1 - ACCUGGCAUACAAUGUAGAUUUCUGU - 26
Evidence experimental
Illumina [1]

Mature ocu-miR-221-3p

Accession MIMAT0048355
Description Oryctolagus cuniculus ocu-miR-221-3p mature miRNA
Sequence 41 - AGCUACAUUGUCUGCUGGGUUUC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344