miRBase entry: ocu-mir-106a

Stem-loop ocu-mir-106a


Accession
MI0039272
Description
Oryctolagus cuniculus ocu-mir-106a precursor miRNA


Sequence

AAAAGUGCUUACAGUGCAGGUAGcuuuuugagaucuACUGCAAUGCGAGCACUUCUUAC
..((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).....

Structure
---AA        A  G     G   c   u 
     AAGUGCUU CA UGCAG UAG uuu  
     |||||||| || ||||| ||| ||| u
     UUCACGAG GU ACGUC Auc aga  
CAUUC        C  A     -   u   g 


Annotation confidence Not enough data
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Genome context
CM000811.1: 108519035-108519093 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from ocu-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-106a-5p

Accession MIMAT0048195
Description Oryctolagus cuniculus ocu-miR-106a-5p mature miRNA
Sequence 1 - AAAAGUGCUUACAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature ocu-miR-106a-3p

Accession MIMAT0048196
Description Oryctolagus cuniculus ocu-miR-106a-3p mature miRNA
Sequence 37 - ACUGCAAUGCGAGCACUUCUUAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344