miRBase entry: ocu-mir-106a

Stem-loop ocu-mir-106a

Accession

MI0039272

Description

Oryctolagus cuniculus ocu-mir-106a precursor miRNA

Sequence

AAAAGUGCUUACAGUGCAGGUAGcuuuuugagaucuACUGCAAUGCGAGCACUUCUUAC
..((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).....

Structure

---AA        A  G     G   c   u 
     AAGUGCUU CA UGCAG UAG uuu  
     |||||||| || ||||| ||| ||| u
     UUCACGAG GU ACGUC Auc aga  
CAUUC        C  A     -   u   g

Annotation confidence Not enough data

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Genome context

CM000811.1: 108519035-108519093 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ocu-mir-106a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-106a-5p

Accession	MIMAT0048195
Description	Oryctolagus cuniculus ocu-miR-106a-5p mature miRNA
Sequence	1 - AAAAGUGCUUACAGUGCAGGUAG - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-106a-3p

Accession	MIMAT0048196
Description	Oryctolagus cuniculus ocu-miR-106a-3p mature miRNA
Sequence	37 - ACUGCAAUGCGAGCACUUCUUAC - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344