miRBase entry: ocu-mir-105a-1

Stem-loop ocu-mir-105a-1

Accession

MI0039270

Description

Oryctolagus cuniculus ocu-mir-105a-1 precursor miRNA

Sequence

UCAAAUGCUCAGACUCCUGUGGUGgcugcucaugcaCCACGGACGUUUGAGCAUGUGCU
.((.(((((((((((((.((((((..........))))))))).)))))))))).))..

Structure

-U  A          -   U      gcug 
  CA AUGCUCAGAC UCC GUGGUG    c
  || |||||||||| ||| ||||||     
  GU UACGAGUUUG AGG CACCac    u
UC  G          C   -      guac

Annotation confidence Not enough data

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Genome context

GL018731.1: 390331-390389 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-105a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-105a-5p

Accession	MIMAT0048192
Description	Oryctolagus cuniculus ocu-miR-105a-5p mature miRNA
Sequence	1 - UCAAAUGCUCAGACUCCUGUGGUG - 24
Evidence	experimental Illumina [1]

Mature ocu-miR-105a-3p

Accession	MIMAT0048193
Description	Oryctolagus cuniculus ocu-miR-105a-3p mature miRNA
Sequence	37 - CCACGGACGUUUGAGCAUGUGCU - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344