miRBase entry: ocu-mir-100

Stem-loop ocu-mir-100


Accession
MI0039265
Description
Oryctolagus cuniculus ocu-mir-100 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGgugauaguccacaCAAGCUUGCGUCUAUAGGUCUG
.(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...

Structure
--A   C      C   A      g  au 
   ACC GUAGAU CGA CUUGUG ug  a
   ||| |||||| ||| |||||| ||   
   UGG UAUCUG GUU GAACac ac  g
GUC   A      C   C      -  cu 


Annotation confidence Not enough data
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Genome context
CM000790.1: 95869540-95869596 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-100-5p

Accession MIMAT0048184
Description Oryctolagus cuniculus ocu-miR-100-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-100-3p

Accession MIMAT0048185
Description Oryctolagus cuniculus ocu-miR-100-3p mature miRNA
Sequence 36 - CAAGCUUGCGUCUAUAGGUCUG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344