miRBase entry: ocu-mir-30e

Stem-loop ocu-mir-30e


Accession
MI0039252
Description
Oryctolagus cuniculus ocu-mir-30e precursor miRNA


Sequence

UGUAAACAUCCUUGACUGGAAGCUguaagguguuaagaggagCUUUCAGUCGGAUGUUUACAGC
(((((((((((..(((((((((((................))))))))))))))))))))))..

Structure
--           UU           guaaggu 
  UGUAAACAUCC  GACUGGAAGCU       g
  |||||||||||  |||||||||||        
  ACAUUUGUAGG  CUGACUUUCga       u
CG           --           ggagaau 


Annotation confidence Not enough data
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Genome context
CM000802.1: 125818449-125818512 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-30e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-30e-5p

Accession MIMAT0048159
Description Oryctolagus cuniculus ocu-miR-30e-5p mature miRNA
Sequence 1 - UGUAAACAUCCUUGACUGGAAGCU - 24
Evidence experimental
Illumina [1]

Mature ocu-miR-30e-3p

Accession MIMAT0048160
Description Oryctolagus cuniculus ocu-miR-30e-3p mature miRNA
Sequence 43 - CUUUCAGUCGGAUGUUUACAGC - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344