miRBase entry: ocu-mir-30b

Stem-loop ocu-mir-30b

Accession

MI0039248

Description

Oryctolagus cuniculus ocu-mir-30b precursor miRNA

Sequence

UGUAAACAUCCUACACUCAGCUguaauacaugaauuggCUGGGAGGUGGAUGUUUACGUC
.((((((((((.((.((((((((............))))))))..))))))))))))...

Structure

--U          U  -A        uaaua 
   GUAAACAUCC AC  CUCAGCUg     c
   |||||||||| ||  ||||||||      
   CAUUUGUAGG UG  GGGUCggu     a
CUG          -  GA        uaagu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

CM000792.1: 150418853-150418912 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-30b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-30b-5p

Accession	MIMAT0048152
Description	Oryctolagus cuniculus ocu-miR-30b-5p mature miRNA
Sequence	1 - UGUAAACAUCCUACACUCAGCU - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-30b-3p

Accession	MIMAT0048153
Description	Oryctolagus cuniculus ocu-miR-30b-3p mature miRNA
Sequence	39 - CUGGGAGGUGGAUGUUUACGUC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344