miRBase entry: ocu-mir-16a

Stem-loop ocu-mir-16a


Accession
MI0039223
Description
Oryctolagus cuniculus ocu-mir-16a precursor miRNA


Sequence

UAGCAGCACGUAAAUACUGGCGuuaagauucuaaaauuaucuCCAGUAUUAACUGUGCUGCUGAA
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..

Structure
--         -  A        C u   gauu 
  UAGCAGCAC GU AAUACUGG G uaa    c
  ||||||||| || |||||||| | |||     
  GUCGUCGUG CA UUAUGACC c auu    u
AA         U  A        u u   aaaa 


Annotation confidence Not enough data
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Genome context
GL018705.1: 3664988-3665052 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-mir-16a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-miR-16a-5p

Accession MIMAT0048105
Description Oryctolagus cuniculus ocu-miR-16a-5p mature miRNA
Sequence 1 - UAGCAGCACGUAAAUACUGGCG - 22
Evidence experimental
Illumina [1]

Mature ocu-miR-16a-3p

Accession MIMAT0048106
Description Oryctolagus cuniculus ocu-miR-16a-3p mature miRNA
Sequence 43 - CCAGUAUUAACUGUGCUGCUGAA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344