miRBase entry: ocu-let-7c

Stem-loop ocu-let-7c


Accession
MI0039209
Description
Oryctolagus cuniculus ocu-let-7c precursor miRNA

Literature search
2 open access papers mention ocu-let-7c
(10 sentences)

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCC
.(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))...

Structure
--U   G   U             ua  g ua  c 
   GAG UAG AGGUUGUAUGGUU  ga u  ca  
   ||| ||| |||||||||||||  || |  || c
   UUC AUC UCCAACAUGUCaa  uu a  gu  
CCU   G   U             --  g gg  c 


Annotation confidence Not enough data
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Genome context
CM000803.1: 144548251-144548317 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ocu-let-7c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ocu-let-7c-5p

Accession MIMAT0048080
Description Oryctolagus cuniculus ocu-let-7c-5p mature miRNA
Sequence 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
Evidence experimental
Illumina [1]

Mature ocu-let-7c-3p

Accession MIMAT0048081
Description Oryctolagus cuniculus ocu-let-7c-3p mature miRNA
Sequence 46 - CUGUACAACCUUCUAGCUUUCC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26733575
    The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
    "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
    "Genome Biol Evol (2016) 8:330-344