Stem-loop cpo-mir-3959

Accession

MI0038870

Description

Cavia porcellus cpo-mir-3959 precursor miRNA

Sequence

GGUUGAUCAGAGAACAUACAUUuuaccagugaUGUAUGUCGACUGAUCCACAGU
.((.((((((.((.((((((((........))))))))))..)))))).))...

Structure

--G  U      -A  A        uua 
   GU GAUCAG  GA CAUACAUU   c
   || ||||||  || ||||||||    
   CA CUAGUC  CU GUAUGUag   c
UGA  C      AG  -        uga 

Annotation confidence Not enough data

Genome context

DS562966.1: 1104334-1104387 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from cpo-mir-3959

Mature cpo-miR-3959-5p

• Accession: MIMAT0047441
• Description: Cavia porcellus cpo-miR-3959-5p mature miRNA
• Sequence: 1 - GGUUGAUCAGAGAACAUACAUU - 22
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-3959-3p

• Accession: MIMAT0047442
• Description: Cavia porcellus cpo-miR-3959-3p mature miRNA
• Sequence: 33 - UGUAUGUCGACUGAUCCACAGU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344