Stem-loop cpo-mir-1197

Accession

MI0038851

Description

Cavia porcellus cpo-mir-1197 precursor miRNA

Sequence

CGGUUGACCAUGGUGUGUACGcuuuaugugugacgUAGGACACAUGGUCUACUUCU
.(((.(((((((.(((.(((((.........).))))..)))))))))).)))...

Structure

--C   U       G   -G    - uuu 
   GGU GACCAUG UGU  UACG c   a
   ||| ||||||| |||  |||| |   u
   UCA CUGGUAC ACA  AUgc g   g
UCU   U       -   GG    a ugu 

Annotation confidence Not enough data

Genome context

DS562966.1: 1085473-1085528 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from cpo-mir-1197

Mature cpo-miR-1197-5p

• Accession: MIMAT0047403
• Description: Cavia porcellus cpo-miR-1197-5p mature miRNA
• Sequence: 1 - CGGUUGACCAUGGUGUGUACG - 21
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-1197-3p

• Accession: MIMAT0047404
• Description: Cavia porcellus cpo-miR-1197-3p mature miRNA
• Sequence: 36 - UAGGACACAUGGUCUACUUCU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344