Stem-loop cpo-mir-545

Accession

MI0038822

Description

Cavia porcellus cpo-mir-545 precursor miRNA

Sequence

CCACAGUACAUGUUUAUUGGAUGaauaaaugaaugagucaUCAACAGACAUUUAUUGUGUGC
.(((((((.((((((....(((((.............)))))...)))))).)))))))...

Structure

--C       C      AUUG     auaaa 
   CACAGUA AUGUUU    GAUGa     u
   ||||||| ||||||    |||||     g
   GUGUUAU UACAGA    CUacu     a
CGU       U      -CAA     gagua 

Annotation confidence Not enough data

Genome context

DS562881.1: 22993124-22993185 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-545

Mature cpo-miR-545-5p

• Accession: MIMAT0047345
• Description: Cavia porcellus cpo-miR-545-5p mature miRNA
• Sequence: 1 - CCACAGUACAUGUUUAUUGGAUG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-545-3p

• Accession: MIMAT0047346
• Description: Cavia porcellus cpo-miR-545-3p mature miRNA
• Sequence: 41 - UCAACAGACAUUUAUUGUGUGC - 62
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344