Stem-loop cpo-mir-543

Accession

MI0038821

Description

Cavia porcellus cpo-mir-543 precursor miRNA

Sequence

AAGUUGCCCGUGUCUUUUUCGcuguauuugugacgAAACAUUCGCGGUGCACUUCUU
((((.(((((((....((((((.........).)))))....))))).))))))...

Structure

---    U  -     UCUU     - ugu 
   AAGU GC CCGUG    UUUCG c   a
   |||| || |||||    ||||| |   u
   UUCA CG GGCGC    AAAgc g   u
UUC    -  U     UUAC     a ugu 

Annotation confidence Not enough data

Genome context

DS562966.1: 1090491-1090547 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from cpo-mir-543

Mature cpo-miR-543-5p

• Accession: MIMAT0047343
• Description: Cavia porcellus cpo-miR-543-5p mature miRNA
• Sequence: 1 - AAGUUGCCCGUGUCUUUUUCG - 21
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-543-3p

• Accession: MIMAT0047344
• Description: Cavia porcellus cpo-miR-543-3p mature miRNA
• Sequence: 36 - AAACAUUCGCGGUGCACUUCUU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344