Stem-loop cpo-mir-542

Accession

MI0038820

Description

Cavia porcellus cpo-mir-542 precursor miRNA

Sequence

UCGGGGAUCAUCAUGUCACCAGauaccauugugcgcuUGUGACAGAUUGAUAACUGAAA
((((..((((...((((((.((.(((....)))..)).))))))...))))..))))..

Structure

--    GG    UCA      C  -a   c 
  UCGG  AUCA   UGUCAC AG  uac a
  ||||  ||||   |||||| ||  |||  
  AGUC  UAGU   ACAGUG uc  gug u
AA    AA    UAG      U  gc   u 

Annotation confidence Not enough data

Genome context

DS562983.1: 2874159-2874217 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-542

Mature cpo-miR-542-5p

• Accession: MIMAT0047341
• Description: Cavia porcellus cpo-miR-542-5p mature miRNA
• Sequence: 1 - UCGGGGAUCAUCAUGUCACCAG - 22
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-542-3p

• Accession: MIMAT0047342
• Description: Cavia porcellus cpo-miR-542-3p mature miRNA
• Sequence: 38 - UGUGACAGAUUGAUAACUGAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344