Stem-loop cpo-mir-541

Accession

MI0038819

Description

Cavia porcellus cpo-mir-541 precursor miRNA

Sequence

AGAGGAUUCUGCUGCCGGUCCCACUccaaaguuuauaaaaugggUGGUGGGCACAGAAUCCGGACU
...((((((((.((((.(..((((.(((............)))))))).)))))))))))).....

Structure

--AGA        C    G UC    U   aaguu 
     GGAUUCUG UGCC G  CCAC cca     u
     |||||||| |||| |  |||| |||      
     CCUAAGAC ACGG U  GGUg ggu     a
UCAGG        -    G --    -   aaaau 

Annotation confidence Not enough data

Genome context

DS562966.1: 1116256-1116321 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cpo-mir-541

Mature cpo-miR-541-5p

• Accession: MIMAT0047339
• Description: Cavia porcellus cpo-miR-541-5p mature miRNA
• Sequence: 1 - AGAGGAUUCUGCUGCCGGUCCCACU - 25
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-541-3p

• Accession: MIMAT0047340
• Description: Cavia porcellus cpo-miR-541-3p mature miRNA
• Sequence: 45 - UGGUGGGCACAGAAUCCGGACU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344