Stem-loop cpo-mir-539

Accession

MI0038818

Description

Cavia porcellus cpo-mir-539 precursor miRNA

Sequence

GGAGAAAUUAUCCUUGGUGUGUUcacuuuauuuaggaagaauCAUACAAGGACAAUUUCUUUUU
.((((((((.((((((.((((....((((......))))...)))))))))).))))))))...

Structure

--G        A      G    UUca    au 
   GAGAAAUU UCCUUG UGUG    cuuu  u
   |||||||| |||||| ||||    ||||   
   UUCUUUAA AGGAAC AUAC    gaag  u
UUU        C      -    -uaa    ga 

Annotation confidence Not enough data

Genome context

DS562966.1: 1100599-1100662 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from cpo-mir-539

Mature cpo-miR-539-5p

• Accession: MIMAT0047337
• Description: Cavia porcellus cpo-miR-539-5p mature miRNA
• Sequence: 1 - GGAGAAAUUAUCCUUGGUGUGUU - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-539-3p

• Accession: MIMAT0047338
• Description: Cavia porcellus cpo-miR-539-3p mature miRNA
• Sequence: 43 - CAUACAAGGACAAUUUCUUUUU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344