Stem-loop cpo-mir-509e

Accession

MI0038814

Description

Cavia porcellus cpo-mir-509e precursor miRNA

Sequence

UCCCUCAGAGAGUUUCAAUCAUUuaucuuuggacaUGAUUGCAGCAUCUGAGGGAGA
(((((((((..(((.(((((((...((....)).))))))).))).)))))))))..

Structure

--         GA   U       Uua  u 
  UCCCUCAGA  GUU CAAUCAU   uc u
  |||||||||  ||| |||||||   ||  
  AGGGAGUCU  CGA GUUAGUa   ag u
AG         -A   C       --c  g 

Annotation confidence Not enough data

Genome context

DS562939.1: 2725364-2725420 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-509e

Mature cpo-miR-509e-5p

• Accession: MIMAT0047329
• Description: Cavia porcellus cpo-miR-509e-5p mature miRNA
• Sequence: 1 - UCCCUCAGAGAGUUUCAAUCAUU - 23
• Evidence: not_experimental

Mature cpo-miR-509e-3p

• Accession: MIMAT0047330
• Description: Cavia porcellus cpo-miR-509e-3p mature miRNA
• Sequence: 36 - UGAUUGCAGCAUCUGAGGGAGA - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344