Stem-loop cpo-mir-501

Accession

MI0038801

Description

Cavia porcellus cpo-mir-501 precursor miRNA

Sequence

AAUCCUUUGUCCCUGAGUGAGAAUGCUuucagaaugcAGUGCUCCCAGGCAAGGGUUCUG
...((((((..((((.(.(((..(((.........)))...)))))))))))))).....

Structure

--AAU      UC    A U   -AA   Uuu 
     CCUUUG  CCUG G GAG   UGC   c
     ||||||  |||| | |||   |||   a
     GGGAAC  GGAC C CUC   Acg   g
GUCUU      --    - -   GUG   uaa 

Annotation confidence Not enough data

Genome context

DS562987.1: 3009773-3009832 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cpo-mir-501

Mature cpo-miR-501-5p

• Accession: MIMAT0047303
• Description: Cavia porcellus cpo-miR-501-5p mature miRNA
• Sequence: 1 - AAUCCUUUGUCCCUGAGUGAGAAUGCU - 27
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-501-3p

• Accession: MIMAT0047304
• Description: Cavia porcellus cpo-miR-501-3p mature miRNA
• Sequence: 38 - AGUGCUCCCAGGCAAGGGUUCUG - 60
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344