Stem-loop cpo-mir-500a

Accession

MI0038799

Description

Cavia porcellus cpo-mir-500a precursor miRNA

Sequence

UAAUCCUUGCUACCCGAGUGAGAGUgcugucucaaugcaAUGCAUCUGGGCAAGAGAAGGGUUCUG
.(((((((.((.((((.(((....(((.........)))...))).))))..))..)))))))...

Structure

--U       -G  -A    A   AGAG   ugu 
   AAUCCUU  CU  CCCG GUG    Ugc   c
   |||||||  ||  |||| |||    |||   u
   UUGGGAA  GA  GGGU UAC    acg   c
GUC       GA  AC    C   -GUA   uaa 

Annotation confidence Not enough data

Genome context

DS562987.1: 3008302-3008367 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cpo-mir-500a

Mature cpo-miR-500a-5p

• Accession: MIMAT0047299
• Description: Cavia porcellus cpo-miR-500a-5p mature miRNA
• Sequence: 1 - UAAUCCUUGCUACCCGAGUGAGAGU - 25
• Evidence: not_experimental

Mature cpo-miR-500a-3p

• Accession: MIMAT0047300
• Description: Cavia porcellus cpo-miR-500a-3p mature miRNA
• Sequence: 40 - AUGCAUCUGGGCAAGAGAAGGGUUCUG - 66
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344