Stem-loop cpo-mir-449c

Accession

MI0038778

Description

Cavia porcellus cpo-mir-449c precursor miRNA

Sequence

AGGCAGUGCAUUGCUAGCUGGCUGUUaagauuuuucauuuuagCAGUUGCUAGUUGCACUCCUCU
(((.((((((..((((((.((((((((((((.....)))))))))))))))))))))))))))..

Structure

--   C      UU      U            u 
  AGG AGUGCA  GCUAGC GGCUGUUaagau u
  ||| ||||||  |||||| |||||||||||| u
  UCC UCACGU  UGAUCG UUGACgauuuua u
UC   -      --      -            c 

Annotation confidence Not enough data

Genome context

DS562884.1: 6899940-6900004 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-449c

Mature cpo-miR-449c-5p

• Accession: MIMAT0047259
• Description: Cavia porcellus cpo-miR-449c-5p mature miRNA
• Sequence: 1 - AGGCAGUGCAUUGCUAGCUGGCUGUU - 26
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-449c-3p

• Accession: MIMAT0047260
• Description: Cavia porcellus cpo-miR-449c-3p mature miRNA
• Sequence: 44 - CAGUUGCUAGUUGCACUCCUCU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344