Stem-loop cpo-mir-342

Accession

MI0038738

Description

Cavia porcellus cpo-mir-342 precursor miRNA

Sequence

AGGGGUGCUAUCUGUGCUGGAGGGACAugaucaauggaauugUCUCACACAGAAAUCGCACCCGUCA
..((((((..((((((.....((((((...((....))..)))))).))))))....))))))....

Structure

--AG      --UA      CUGGA      uga  a 
    GGGUGC    UCUGUG     GGGACA   uc a
    ||||||    ||||||     ||||||   ||  
    CCCACG    AGACAC     CUCUgu   ag u
ACUG      CUAA      ----A      -ua  g 

Annotation confidence Not enough data

Genome context

DS562969.1: 3985857-3985923 [+]

Mature cpo-miR-342-5p

• Accession: MIMAT0047180
• Description: Cavia porcellus cpo-miR-342-5p mature miRNA
• Sequence: 1 - AGGGGUGCUAUCUGUGCUGGAGGGACA - 27
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-342-3p

• Accession: MIMAT0047181
• Description: Cavia porcellus cpo-miR-342-3p mature miRNA
• Sequence: 43 - UCUCACACAGAAAUCGCACCCGUCA - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344