Stem-loop cpo-mir-339

Accession

MI0038736

Description

Cavia porcellus cpo-mir-339 precursor miRNA

Sequence

UCCCUGUCCUCCAGGAGCUCACGuaugccugcuugUGAGCGCCUCGAUGACAGAGCCG
...(((((.((.(((.(((((((..........))))))).))).)).))))).....

Structure

--UCC     C  C   A       uaug 
     CUGUC UC AGG GCUCACG    c
     ||||| || ||| |||||||     
     GACAG AG UCC CGAGUgu    c
GCCGA     U  C   G       ucgu 

Annotation confidence Not enough data

Genome context

DS562885.1: 12803260-12803317 [+]

Mature cpo-miR-339-5p

• Accession: MIMAT0047176
• Description: Cavia porcellus cpo-miR-339-5p mature miRNA
• Sequence: 1 - UCCCUGUCCUCCAGGAGCUCACG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-339-3p

• Accession: MIMAT0047177
• Description: Cavia porcellus cpo-miR-339-3p mature miRNA
• Sequence: 36 - UGAGCGCCUCGAUGACAGAGCCG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344