Stem-loop cpo-mir-224

Accession

MI0038716

Description

Cavia porcellus cpo-mir-224 precursor miRNA

Sequence

UAAGUCACUAGUGGUUCCGUUUAGuagauguuugugcauuguuucaAAAUGGUGCCCUAGUGACUACAA
..(((((((((.(((.((((((.(..(((((....)))))....).)))))).))))))))))))....

Structure

--UA         U   U      A --ua     u 
    AGUCACUAG GGU CCGUUU G    gaugu u
    ||||||||| ||| |||||| |    |||||  
    UCAGUGAUC CCG GGUAAA c    uuacg g
AACA         -   U      a uuug     u 

Annotation confidence Not enough data

Genome context

DS563052.1: 1056776-1056844 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-224

Mature cpo-miR-224-5p

• Accession: MIMAT0047136
• Description: Cavia porcellus cpo-miR-224-5p mature miRNA
• Sequence: 1 - UAAGUCACUAGUGGUUCCGUUUAG - 24
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-224-3p

• Accession: MIMAT0047137
• Description: Cavia porcellus cpo-miR-224-3p mature miRNA
• Sequence: 47 - AAAUGGUGCCCUAGUGACUACAA - 69
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344