Stem-loop cpo-mir-222

Accession

MI0038714

Description

Cavia porcellus cpo-mir-222 precursor miRNA

Literature search

1 open access papers mention cpo-mir-222
(2 sentences)

Sequence

GGCUCAGUAGCCAGUGUAGAUCCugucuuuuguaaucagcAGCUACAUCUGGCUACUGGGUCUC
(((((((((((((((((((...(((...........)))...))))).))))))))))))))..

Structure

--              -     AUC   ucuu 
  GGCUCAGUAGCCAG UGUAG   Cug    u
  |||||||||||||| |||||   |||    u
  CUGGGUCAUCGGUC ACAUC   gac    g
CU              U     GAc   uaau 

Annotation confidence Not enough data

Genome context

DS562888.1: 12034584-12034647 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-222

Mature cpo-miR-222-5p

• Accession: MIMAT0047132
• Description: Cavia porcellus cpo-miR-222-5p mature miRNA
• Sequence: 1 - GGCUCAGUAGCCAGUGUAGAUCC - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-222-3p

• Accession: MIMAT0047133
• Description: Cavia porcellus cpo-miR-222-3p mature miRNA
• Sequence: 41 - AGCUACAUCUGGCUACUGGGUCUC - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344