Stem-loop cpo-mir-216a

Accession

MI0038707

Description

Cavia porcellus cpo-mir-216a precursor miRNA

Sequence

UAAUCUCAGCUGGCAACUGUGAGaugcucauguaaucccuCACAGUGGUCUCUGGGAUUAUG
(((((((((..(((.((((((((.(((....)))....)))))))).))).)))))))))..

Structure

--         CU   A        ---a   u 
  UAAUCUCAG  GGC ACUGUGAG    ugc c
  |||||||||  ||| ||||||||    |||  
  AUUAGGGUC  CUG UGACACuc    aug a
GU         -U   G        ccua   u 

Annotation confidence Not enough data

Genome context

DS562903.1: 8647413-8647474 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-216a

Mature cpo-miR-216a-5p

• Accession: MIMAT0047119
• Description: Cavia porcellus cpo-miR-216a-5p mature miRNA
• Sequence: 1 - UAAUCUCAGCUGGCAACUGUGAG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-216a-3p

• Accession: MIMAT0047120
• Description: Cavia porcellus cpo-miR-216a-3p mature miRNA
• Sequence: 41 - CACAGUGGUCUCUGGGAUUAUG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344