Stem-loop cpo-mir-200c

Accession

MI0038694

Description

Cavia porcellus cpo-mir-200c precursor miRNA

Sequence

CGUCUUACCCUGCAGUGUUUGGgugcugguuuggucucUAAUACUGCCGGGUAAUGAUGGAgg
((((((((((.((((((((.(((.(((.....)))))).)))))))).)))))).))))....

Structure

----    -      U        U   u   g 
    CGUC UUACCC GCAGUGUU GGg gcu g
    |||| |||||| |||||||| ||| ||| u
    GUAG AAUGGG CGUCAUAA cuc ugg u
ggAG    U      C        U   -   u 

Annotation confidence Not enough data

Genome context

DS562962.1: 310456-310518 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-200c

Mature cpo-miR-200c-5p

• Accession: MIMAT0047093
• Description: Cavia porcellus cpo-miR-200c-5p mature miRNA
• Sequence: 1 - CGUCUUACCCUGCAGUGUUUGG - 22
• Evidence: not_experimental

Mature cpo-miR-200c-3p

• Accession: MIMAT0047094
• Description: Cavia porcellus cpo-miR-200c-3p mature miRNA
• Sequence: 39 - UAAUACUGCCGGGUAAUGAUGGA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344