Stem-loop cpo-mir-200a

Accession

MI0038692

Description

Cavia porcellus cpo-mir-200a precursor miRNA

Sequence

CAUCUUACCGGACAGUGCUGGAuuucuuggcuugacucUAACACUGUCUGGUAACGAUGUU
(((((((((((((((((.((((..((.......)).)))).))))))))))))).))))..

Structure

--    -             C    uu  uu 
  CAUC UUACCGGACAGUG UGGA  uc  g
  |||| ||||||||||||| ||||  ||  g
  GUAG AAUGGUCUGUCAC AUcu  ag  c
UU    C             A    -c  uu 

Annotation confidence Not enough data

Genome context

DS563041.1: 1149699-1149759 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-200a

Mature cpo-miR-200a-5p

• Accession: MIMAT0047089
• Description: Cavia porcellus cpo-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACCGGACAGUGCUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-200a-3p

• Accession: MIMAT0047090
• Description: Cavia porcellus cpo-miR-200a-3p mature miRNA
• Sequence: 39 - UAACACUGUCUGGUAACGAUGUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344