Stem-loop cpo-mir-188

Accession

MI0038676

Description

Cavia porcellus cpo-mir-188 precursor miRNA

Sequence

CAUCCCUUGCAUGGUGGAGGGugagcuuucuggaaacccCUCCCACAUGCAGGGUUUGCA
((..(((((((((..((((((....((....))....))))))..)))))))))..))..

Structure

--  UC         GU      ugag  u 
  CA  CCUUGCAUG  GGAGGG    cu u
  ||  |||||||||  ||||||    ||  
  GU  GGGACGUAC  CCUCcc    gg c
AC  UU         AC      caaa  u 

Annotation confidence Not enough data

Genome context

DS562987.1: 3003465-3003524 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from cpo-mir-188

Mature cpo-miR-188-5p

• Accession: MIMAT0047060
• Description: Cavia porcellus cpo-miR-188-5p mature miRNA
• Sequence: 1 - CAUCCCUUGCAUGGUGGAGGG - 21
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-188-3p

• Accession: MIMAT0047061
• Description: Cavia porcellus cpo-miR-188-3p mature miRNA
• Sequence: 40 - CUCCCACAUGCAGGGUUUGCA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344