Stem-loop cpo-mir-149

Accession

MI0038658

Description

Cavia porcellus cpo-mir-149 precursor miRNA

Literature search

1 open access papers mention cpo-mir-149
(2 sentences)

Sequence

34976 reads, 23096.0 reads per million, 7 experiments

UCUGGCUCCGUGUCUUCACUCCCgugucuguccgaggaggGAGGGAGGGACGGGGGCUGUGCU
...(.((((((.(((((.(((((.(.((.....)).).)))))))))).)))))).)......

Structure

---UCU G      G     A     g g  u 
      G CUCCGU UCUUC CUCCC u uc g
      | |||||| ||||| ||||| | || u
      C GGGGCA GGAGG GAGgg g ag c
UCGUGU G      G     -     a g  c 

Annotation confidence Medium

Genome context

DS562868.1: 23532946-23533008 [-]

Mature cpo-miR-149-5p

• Accession: MIMAT0047026
• Description: Cavia porcellus cpo-miR-149-5p mature miRNA
• Sequence: 1 - UCUGGCUCCGUGUCUUCACUCCC - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-149-3p

• Accession: MIMAT0047027
• Description: Cavia porcellus cpo-miR-149-3p mature miRNA
• Sequence: 41 - GAGGGAGGGACGGGGGCUGUGCU - 63
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344