Stem-loop cpo-mir-106a

Accession

MI0038618

Description

Cavia porcellus cpo-mir-106a precursor miRNA

Sequence

AAAAGUGCUUACAGUGCAGGUAGcuuuuuaagaucuACUGCAAUGCAAGCACUUCUUAC
..((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).....

Structure

---AA        A  G     G   c   u 
     AAGUGCUU CA UGCAG UAG uuu  
     |||||||| || ||||| ||| ||| u
     UUCACGAA GU ACGUC Auc aga  
CAUUC        C  A     -   u   a 

Annotation confidence Not enough data

Genome context

DS562983.1: 2513060-2513118 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-106a

Mature cpo-miR-106a-5p

• Accession: MIMAT0046955
• Description: Cavia porcellus cpo-miR-106a-5p mature miRNA
• Sequence: 1 - AAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-106a-3p

• Accession: MIMAT0046956
• Description: Cavia porcellus cpo-miR-106a-3p mature miRNA
• Sequence: 37 - ACUGCAAUGCAAGCACUUCUUAC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344