Stem-loop cpo-mir-98

Accession

MI0038609

Description

Cavia porcellus cpo-mir-98 precursor miRNA

Sequence

UGAGGUAGUAAGUUGUAUUGUUgugggguaaggauuuaaggccccauuaagaagauaaCUAUACGACUUACUACUUUCCC
.(((((((((((((((((.((((((((((...........))))))).........))).)))))))))))))))))...

Structure

--U                 U   ---------       aagg 
   GAGGUAGUAAGUUGUAU GUU         guggggu    a
   ||||||||||||||||| |||         |||||||    u
   UUUCAUCAUUCAGCAUA Caa         uaccccg    u
CCC                 U   uagaagaau       gaau 

Annotation confidence Not enough data

Genome context

DS562994.1: 1795150-1795229 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-98

Mature cpo-miR-98-5p

• Accession: MIMAT0046939
• Description: Cavia porcellus cpo-miR-98-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAAGUUGUAUUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-98-3p

• Accession: MIMAT0046940
• Description: Cavia porcellus cpo-miR-98-3p mature miRNA
• Sequence: 59 - CUAUACGACUUACUACUUUCCC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344