Stem-loop cpo-mir-27b

Accession

MI0038584

Description

Cavia porcellus cpo-mir-27b precursor miRNA

Literature search

1 open access papers mention cpo-mir-27b
(3 sentences)

Sequence

AGAGCUUAGCUGAUUGGUGAACAgugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGC
(((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))..

Structure

--           G    G       ugau   u 
  AGAGCUUAGCU AUUG UGAACAg    ugg  
  ||||||||||| |||| |||||||    ||| u
  UCUUGAAUCGG UGAC ACUUguu    gcc  
CG           -    -       --uc   u 

Annotation confidence Not enough data

Genome context

DS562897.1: 4055574-4055636 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-27b

Mature cpo-miR-27b-5p

• Accession: MIMAT0046892
• Description: Cavia porcellus cpo-miR-27b-5p mature miRNA
• Sequence: 1 - AGAGCUUAGCUGAUUGGUGAACA - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-27b-3p

• Accession: MIMAT0046893
• Description: Cavia porcellus cpo-miR-27b-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCUGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344