Stem-loop cpo-mir-20b

Accession

MI0038572

Description

Cavia porcellus cpo-mir-20b precursor miRNA

Sequence

aguacCAAAGUGCUCAUAGUGCAGGUAGUuuuggcauuacucUACUGUAGUGUGGGCACUUCCAGuacu
(((((..(((((((((((.(((((..(((.........)))...))))).)))))))))))...)))))

Structure

     -CA           G     -GU   uuu 
aguac   AAGUGCUCAUA UGCAG   AGU   g
|||||   ||||||||||| |||||   |||   g
ucauG   UUCACGGGUGU AUGUC   uca   c
     ACC           G     AUc   uua 

Annotation confidence Not enough data

Genome context

DS562983.1: 2512676-2512744 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-20b

Mature cpo-miR-20b-5p

• Accession: MIMAT0046870
• Description: Cavia porcellus cpo-miR-20b-5p mature miRNA
• Sequence: 6 - CAAAGUGCUCAUAGUGCAGGUAGU - 29
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-20b-3p

• Accession: MIMAT0046871
• Description: Cavia porcellus cpo-miR-20b-3p mature miRNA
• Sequence: 43 - UACUGUAGUGUGGGCACUUCCAG - 65
• Evidence: not_experimental

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344