Stem-loop cpo-mir-17

Accession

MI0038565

Description

Cavia porcellus cpo-mir-17 precursor miRNA

Literature search

1 open access papers mention cpo-mir-17
(1 sentences)

Sequence

CAAAGUGCUUACAGUGCAGGUAGugauaugugcaucuACUGCAGUGAAGGCACUUGUAG
..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))....

Structure

--CA        A  G     G   -  au 
    AAGUGCUU CA UGCAG UAG ug  a
    |||||||| || ||||| ||| ||  u
    UUCACGGA GU ACGUC Auc ac  g
GAUG        A  G     -   u  gu 

Annotation confidence Not enough data

Genome context

DS562860.1: 32029419-32029477 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from cpo-mir-17

Mature cpo-miR-17-5p

• Accession: MIMAT0046857
• Description: Cavia porcellus cpo-miR-17-5p mature miRNA
• Sequence: 1 - CAAAGUGCUUACAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature cpo-miR-17-3p

• Accession: MIMAT0046858
• Description: Cavia porcellus cpo-miR-17-3p mature miRNA
• Sequence: 38 - ACUGCAGUGAAGGCACUUGUAG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344