Stem-loop cpo-let-7f-1

Accession

MI0038547

Description

Cavia porcellus cpo-let-7f-1 precursor miRNA

Sequence

ucagagUGAGGUAGUAGAUUGUAUAGUUgugggguagugauuuuacccuguuuaggagauaaCUAUACAAUCUAUUGCCUUCCC
.......((((((((((((((((((((((((((((((.....))))))).........)))))))))))))))))))))))...

Structure

ucagagU                       ---------       u 
       GAGGUAGUAGAUUGUAUAGUUgu         gggguag g
       |||||||||||||||||||||||         ||||||| a
       UUCCGUUAUCUAACAUAUCaaua         ucccauu u
----CCC                       gaggauuug       u 

Annotation confidence Not enough data

Genome context

DS562897.1: 102055-102138 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-let-7f-1

Mature cpo-let-7f-5p

• Accession: MIMAT0046828
• Description: Cavia porcellus cpo-let-7f-5p mature miRNA
• Sequence: 7 - UGAGGUAGUAGAUUGUAUAGUU - 28
• Evidence: experimental ; Illumina [1]

Mature cpo-let-7f-3p

• Accession: MIMAT0046829
• Description: Cavia porcellus cpo-let-7f-3p mature miRNA
• Sequence: 63 - CUAUACAAUCUAUUGCCUUCCC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344