miRBase entry: bta-mir-12005-2

Stem-loop bta-mir-12005-2


Accession
MI0038391
Description
Bos taurus bta-mir-12005-2 precursor miRNA


Sequence

21 reads, 3 reads per million, 7 experiments
cuccccuuaaggacuucauagaauaugauauuuaaauAUGAAGUCCUUAAGGGGAGGGU
(((((((((((((((((((((((((...)))))...))))))))))))))))))))...

Structure
---                    ---     u 
   cuccccuuaaggacuucaua   gaaua  
   ||||||||||||||||||||   ||||| g
   GAGGGGAAUUCCUGAAGUAu   uuuau  
UGG                    aaa     a 


Annotation confidence Not enough data
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Genome context
chr5: 38431264-38431322 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-12005-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-12005

Accession MIMAT0046666
Description Bos taurus bta-miR-12005 mature miRNA
Sequence 38 - AUGAAGUCCUUAAGGGGAGGGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26519053
    Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil
    Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM
    BMC Genomics (2015) 16:884