miRBase entry: bta-mir-12001

Stem-loop bta-mir-12001


Accession
MI0038384
Description
Bos taurus bta-mir-12001 precursor miRNA


Sequence

8 reads, 1 reads per million, 6 experiments
CCUGUGAGGGCUUCACCCUGGAcuauggagcagcuguccaagggugaauccucgcugacc
...(((((((.((((((((((((............)))).))))))))))))))).....

Structure
--CCU       C        -    uaugg 
     GUGAGGG UUCACCCU GGAc     a
     ||||||| |||||||| ||||      
     cgcuccu aaguggga ccug     g
ccagu       -        a    ucgac 


Annotation confidence Not enough data
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Genome context
chr5: 110461365-110461424 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bta-mir-12001
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bta-miR-12001

Accession MIMAT0046660
Description Bos taurus bta-miR-12001 mature miRNA
Sequence 1 - CCUGUGAGGGCUUCACCCUGGA - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 26519053
    Deep sequencing shows microRNA involvement in bovine mammary gland adaptation to diets supplemented with linseed oil or safflower oil
    Li R, Beaudoin F, Ammah AA, Bissonnette N, Benchaar C, Zhao X, Lei C, Ibeagha-Awemu EM
    BMC Genomics (2015) 16:884