miRBase entry: pte-mir-11961c

Stem-loop pte-mir-11961c

Accession

MI0038143

Description

Parasteatoda tepidariorum pte-mir-11961c precursor miRNA

Literature search

0 open access papers mention pte-mir-11961c
(0 sentences)

Sequence

GGUCGGUUUCUGCUGUGAGACGgcggucgcugucguccgUAUCACAGCAGAAUUUGACAUUU
.(((((.(((((((((((((((((((...))))))))....))))))))))).)))))....

Structure

---G     U           ----        u 
    GUCGG UUCUGCUGUGA    GACGgcgg  
    ||||| |||||||||||    |||||||| c
    CAGUU AAGACGACACU    cugcuguc  
UUUA     U           AUgc        g

Annotation confidence Not enough data

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Genome context

Scf5bK3_2297: 45051-45112 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pte-mir-11961c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-11961c-5p

Accession	MIMAT0046310
Description	Parasteatoda tepidariorum pte-miR-11961c-5p mature miRNA
Sequence	1 - GGUCGGUUUCUGCUGUGAGACG - 22
Evidence	experimental Illumina [1]

Mature pte-miR-11961c-3p

Accession	MIMAT0046311
Description	Parasteatoda tepidariorum pte-miR-11961c-3p mature miRNA
Sequence	40 - UAUCACAGCAGAAUUUGACAUUU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144