Stem-loop pte-mir-11961b

Accession

MI0038142

Description

Parasteatoda tepidariorum pte-mir-11961b precursor miRNA

Literature search

0 open access papers mention pte-mir-11961b
(0 sentences)

Sequence

GGGCGGUUUCUGCUGUGAAACGacgauugcaguuuuccgUUUCACAGUAGAACUAGCUAUU
.(((...(((((((((((((((..((.......))..)))))))))))))))...)))...

Structure

--G   GGU               ac  uu 
   GGC   UUCUGCUGUGAAACG  ga  g
   |||   |||||||||||||||  ||  c
   UCG   AAGAUGACACUUUgc  uu  a
UUA   AUC               cu  ug 

Annotation confidence Not enough data

Genome context

Scf5bK3_2297: 46907-46967 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pte-mir-11961b

Mature pte-miR-11961b-5p

• Accession: MIMAT0046308
• Description: Parasteatoda tepidariorum pte-miR-11961b-5p mature miRNA
• Sequence: 1 - GGGCGGUUUCUGCUGUGAAACG - 22
• Evidence: experimental ; Illumina [1]

Mature pte-miR-11961b-3p

• Accession: MIMAT0046309
• Description: Parasteatoda tepidariorum pte-miR-11961b-3p mature miRNA
• Sequence: 40 - UUUCACAGUAGAACUAGCUAUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144