Stem-loop pte-mir-11961a

Accession

MI0038141

Description

Parasteatoda tepidariorum pte-mir-11961a precursor miRNA

Literature search

0 open access papers mention pte-mir-11961a
(0 sentences)

Sequence

GGUCAGUAUCUGCUGUGAUACGgguggcgcaguuauucgUAUCACAAUAGUGCUAGACAUU
.(((((((.(((.(((((((((((((((...))))))))))))))).))))))).)))...

Structure

--G   -    U   C               g 
   GUC AGUA CUG UGUGAUACGgguggc  
   ||| |||| ||| ||||||||||||||| c
   CAG UCGU GAU ACACUAUgcuuauug  
UUA   A    -   A               a 

Annotation confidence Not enough data

Genome context

Scf5bK3_2297: 44299-44359 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from pte-mir-11961a

Mature pte-miR-11961a-5p

• Accession: MIMAT0046306
• Description: Parasteatoda tepidariorum pte-miR-11961a-5p mature miRNA
• Sequence: 1 - GGUCAGUAUCUGCUGUGAUACG - 22
• Evidence: experimental ; Illumina [1]

Mature pte-miR-11961a-3p

• Accession: MIMAT0046307
• Description: Parasteatoda tepidariorum pte-miR-11961a-3p mature miRNA
• Sequence: 40 - UAUCACAAUAGUGCUAGACAUU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144