Stem-loop pte-mir-11954

Accession

MI0038131

Description

Parasteatoda tepidariorum pte-mir-11954 precursor miRNA

Sequence

UGAUGUACUGAGACUCCGAUUCcaacagcuguuuacgaauuccagaaccAGAGUCCCAGUACACCAACCCA
((.(((((((.(((((.(((((.(((....)))...))))).........))))).))))))).)).....

Structure

-----  A       A     --------C     --c   a 
     UG UGUACUG GACUC         GAUUC   aac g
     || ||||||| |||||         |||||   |||  
     AC ACAUGAC CUGAG         uuaag   uug c
ACCCA  C       C     Accaagacc     cau   u 

Annotation confidence Not enough data

Genome context

Scf5bK3_599: 2934827-2934897 [+]

Mature pte-miR-11954-5p

• Accession: MIMAT0046290
• Description: Parasteatoda tepidariorum pte-miR-11954-5p mature miRNA
• Sequence: 1 - UGAUGUACUGAGACUCCGAUUC - 22
• Evidence: experimental ; Illumina [1]

Mature pte-miR-11954-3p

• Accession: MIMAT0046291
• Description: Parasteatoda tepidariorum pte-miR-11954-3p mature miRNA
• Sequence: 50 - AGAGUCCCAGUACACCAACCCA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144