miRBase entry: pte-mir-11951a

Stem-loop pte-mir-11951a


Accession
MI0038126
Description
Parasteatoda tepidariorum pte-mir-11951a precursor miRNA

Literature search
1 open access papers mention pte-mir-11951a
(1 sentences)

Sequence

AAAGCUCUUGGGAAAUUAUGUUcuuuauuugcguaaCAUGUUUUCUCCAGAGCUUAUC
.(((((((.((((((.(((((((.........).)))))).)))))).)))))))...

Structure
--A       U      U      - uuu 
   AAGCUCU GGGAAA UAUGUU c   a
   ||||||| |||||| |||||| |   u
   UUCGAGA CUCUUU GUACaa g   u
CUA       C      U      u cgu 


Annotation confidence Not enough data
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Genome context
Scf5bK3_537.1: 13300262-13300319 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-11951a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-11951a-5p

Accession MIMAT0046280
Description Parasteatoda tepidariorum pte-miR-11951a-5p mature miRNA
Sequence 1 - AAAGCUCUUGGGAAAUUAUGUU - 22
Evidence experimental
Illumina [1]

Mature pte-miR-11951a-3p

Accession MIMAT0046281
Description Parasteatoda tepidariorum pte-miR-11951a-3p mature miRNA
Sequence 37 - CAUGUUUUCUCCAGAGCUUAUC - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144