Stem-loop pte-mir-11942d

Accession

MI0038115

Description

Parasteatoda tepidariorum pte-mir-11942d precursor miRNA

Literature search

1 open access papers mention pte-mir-11942d
(2 sentences)

Sequence

UGUUAAGACUGUCAGUGUUUGGGuuuaaauaaguuucAAACACUGACAGUCUUGACAGA
(((((((((((((((((((((((...........)))))))))))))))))))))))..

Structure

--                       uuua 
  UGUUAAGACUGUCAGUGUUUGGG    a
  |||||||||||||||||||||||    a
  ACAGUUCUGACAGUCACAAAcuu    u
AG                       ugaa 

Annotation confidence Not enough data

Genome context

Scf5bK3_50: 6967991-6968049 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-11942d

Mature pte-miR-11942d-5p

• Accession: MIMAT0046260
• Description: Parasteatoda tepidariorum pte-miR-11942d-5p mature miRNA
• Sequence: 1 - UGUUAAGACUGUCAGUGUUUGGG - 23
• Evidence: experimental ; Illumina [1]

Mature pte-miR-11942d-3p

• Accession: MIMAT0046261
• Description: Parasteatoda tepidariorum pte-miR-11942d-3p mature miRNA
• Sequence: 38 - AAACACUGACAGUCUUGACAGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144