Stem-loop pte-mir-11942c

Accession

MI0038114

Description

Parasteatoda tepidariorum pte-mir-11942c precursor miRNA

Literature search

1 open access papers mention pte-mir-11942c
(2 sentences)

Sequence

UGUUAAGACUGUCAGUGUUUGGUuucuaucaauucucAAACACUGGCAGUCUUAACAAA
((((((((((((((((((((((.............))))))))))))))))))))))..

Structure

--                      Uuucu 
  UGUUAAGACUGUCAGUGUUUGG     a
  ||||||||||||||||||||||     u
  ACAAUUCUGACGGUCACAAAcu     c
AA                      cuuaa 

Annotation confidence Not enough data

Genome context

Scf5bK3_50: 6968144-6968202 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-11942c

Mature pte-miR-11942c-5p

• Accession: MIMAT0046258
• Description: Parasteatoda tepidariorum pte-miR-11942c-5p mature miRNA
• Sequence: 1 - UGUUAAGACUGUCAGUGUUUGGU - 23
• Evidence: experimental ; Illumina [1]

Mature pte-miR-11942c-3p

• Accession: MIMAT0046259
• Description: Parasteatoda tepidariorum pte-miR-11942c-3p mature miRNA
• Sequence: 38 - AAACACUGGCAGUCUUAACAAA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144