Stem-loop pte-mir-96

Accession

MI0038104

Description

Parasteatoda tepidariorum pte-mir-96 precursor miRNA

Literature search

1 open access papers mention pte-mir-96
(1 sentences)

Sequence

UUUGGCACUGUCACAUUUUUGUgugucuauaauucuacAAAAAUUGUGAUAGUGUCAAGC
(((((((((((((((((((((((............)))))))).))))))))))))))).

Structure

-               -        ugucu 
 UUUGGCACUGUCACA UUUUUGUg     a
 ||||||||||||||| ||||||||      
 GAACUGUGAUAGUGU AAAAAcau     u
C               U        cuuaa 

Annotation confidence Not enough data

Genome context

Scf5bK3_537.1: 22595291-22595350 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-96

Mature pte-miR-96-5p

• Accession: MIMAT0046239
• Description: Parasteatoda tepidariorum pte-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUGUCACAUUUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature pte-miR-96-3p

• Accession: MIMAT0046240
• Description: Parasteatoda tepidariorum pte-miR-96-3p mature miRNA
• Sequence: 39 - AAAAAUUGUGAUAGUGUCAAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 27324919
   Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
   Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
   Genome Biol Evol (2016) 8:2133-2144