miRBase entry: pte-mir-87b

Stem-loop pte-mir-87b


Accession
MI0038097
Description
Parasteatoda tepidariorum pte-mir-87b precursor miRNA


Sequence

CAGCCCGGAGCCUUGUCUCAACaugugauguaguauucagUUGAGCAAAGUUUCAGGCGAAU
..(((.(((((.(((.((((((...(((........)))))))))))).))))).)))....

Structure
--CA   C     C   U      aug   ugu 
    GCC GGAGC UUG CUCAAC   uga   a
    ||| ||||| ||| ||||||   |||    
    CGG CUUUG AAC GAGUUg   acu   g
UAAG   A     A   -      ---   uau 


Annotation confidence Not enough data
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Genome context
Scf5bK3_2865: 1396007-1396068 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pte-mir-87b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pte-miR-87b-5p

Accession MIMAT0046227
Description Parasteatoda tepidariorum pte-miR-87b-5p mature miRNA
Sequence 1 - CAGCCCGGAGCCUUGUCUCAAC - 22
Evidence experimental
Illumina [1]

Mature pte-miR-87b-3p

Accession MIMAT0046228
Description Parasteatoda tepidariorum pte-miR-87b-3p mature miRNA
Sequence 41 - UUGAGCAAAGUUUCAGGCGAAU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 27324919
    Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
    Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
    Genome Biol Evol (2016) 8:2133-2144