miRBase entry: pte-mir-87b

Stem-loop pte-mir-87b

Accession

MI0038097

Description

Parasteatoda tepidariorum pte-mir-87b precursor miRNA

Sequence

CAGCCCGGAGCCUUGUCUCAACaugugauguaguauucagUUGAGCAAAGUUUCAGGCGAAU
..(((.(((((.(((.((((((...(((........)))))))))))).))))).)))....

Structure

--CA   C     C   U      aug   ugu 
    GCC GGAGC UUG CUCAAC   uga   a
    ||| ||||| ||| ||||||   |||    
    CGG CUUUG AAC GAGUUg   acu   g
UAAG   A     A   -      ---   uau

Annotation confidence Not enough data

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Genome context

Scf5bK3_2865: 1396007-1396068 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pte-mir-87b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pte-miR-87b-5p

Accession	MIMAT0046227
Description	Parasteatoda tepidariorum pte-miR-87b-5p mature miRNA
Sequence	1 - CAGCCCGGAGCCUUGUCUCAAC - 22
Evidence	experimental Illumina [1]

Mature pte-miR-87b-3p

Accession	MIMAT0046228
Description	Parasteatoda tepidariorum pte-miR-87b-3p mature miRNA
Sequence	41 - UUGAGCAAAGUUUCAGGCGAAU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 27324919
Pervasive microRNA Duplication in Chelicerates: Insights from the Embryonic microRNA Repertoire of the Spider Parasteatoda tepidariorum
Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP
Genome Biol Evol (2016) 8:2133-2144